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List of papers citing SIGENAE

2016

  1. Approche intégrative du développement musculaire afin de décrire le processus de maturation en lien avec la survie néonatale
  2. Ancient origin of lubricated joints in bony vertebrates
  3. Cover crops prevent the deleterious effect of nitrogen fertilisation on bacterial diversity by maintaining the carbon content of ploughed soil
  4. Sexually dimorphic gene expressions in eels: useful markers for early sex assessment in a conservation context
  5. Gene Expression Profiling Reveals Functional Specialization along the Intestinal Tract of a Carnivorous Teleostean Fish (Dicentrarchus labrax)
  6. Comprehensive RNA-Seq profiling to evaluate lactating sheep mammary gland transcriptome
  7. Dietary selenium disrupts hepatic triglyceride stores and transcriptional networks associated with growth and Notch signaling in juvenile rainbow trout
  8. Gene expression profiling of trout regenerating muscle reveals common transcriptional signatures with hyperplastic growth zones of the post-embryonic myotome
  9. Dietary glucose stimulus at larval stage modifies the carbohydrate metabolic pathway in gilthead seabream (Sparus aurata) juveniles: An in vivo approach using 14C-starch
  10. Conséquences à long-terme d’une alimentation à base de matières premières végétales sur la régulation du métabolisme énergétique et lipidique chez la truite arc-en-ciel : focus particulier sur les effets trans-générationnels et les stades précoces
  11. The Glycerol-3-Phosphate Acyltransferase GPAT6 from Tomato Plays a Central Role in Fruit Cutin Biosynthesis
  12. Molecular pathways associated with the nutritional programming of plant-based diet acceptance in rainbow trout following an early feeding exposure
  13. In vitro evidence in rainbow trout supporting glucosensing mediated by sweet taste receptor, LXR, and mitochondrial activity in Brockmann bodies, and sweet taste receptor in liver
  14. Glucose metabolism ontogenesis in rainbow trout (Oncorhynchus mykiss) in the light of the recently sequenced genome: new tools for intermediary metabolism programming
  15. The Extent of mRNA Editing Is Limited in Chicken Liver and Adipose, but Impacted by Tissular Context, Genotype, Age, and Feeding as Exemplified with a Conserved Edited Site in COG3
  16. 16S rRNA amplicon sequencing for epidemiological surveys of bacteria in wildlife: the importance of cleaning post-sequencing data before estimating positivity, prevalence and co-infection
  17. Comprehensive RNA-Seq profiling to evaluate lactating sheep mammary gland transcriptome
  18. In vitro evidence supports the presence of glucokinase-independent glucosensing mechanisms in hypothalamus and hindbrain of rainbow trout
  19. Dietary Lipid and Carbohydrate Interactions: Implications on Lipid and Glucose Absorption, Transport in Gilthead Sea Bream (Sparus aurata) Juveniles
  20. The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons
  21. Postprandial kinetics of gene expression of proteins involved in the digestive process in rainbow trout (O. mykiss) and impact of diet composition
  22. Characterization of an extensive rainbow trout miRNA transcriptome by next generation sequencing
  23. The fetal ovary exhibits temporal sensitivity to a ‘real-life’ mixture of environmental chemicals
  24. Responses in Micro-Mineral Metabolism in Rainbow Trout to Change in Dietary Ingredient Composition and Inclusion of a Micro-Mineral Premix
  25. Intracerebroventricular ghrelin treatment affects lipid metabolism in liver of rainbow trout (Oncorhynchus mykiss)
  26. Glucose metabolism ontogenesis in rainbow trout (Oncorhynchus mykiss) in the light of the recently sequenced genome: new tools for intermediary metabolism programming
  27. Molecular alterations induced by a high-fat high-fiber diet in porcine adipose tissues: variations according to the anatomical fat location
  28. 16S rRNA amplicon sequencing for epidemiological surveys of bacteria in wildlife: the importance of cleaning post-sequencing data before estimating positivity, prevalence and co-infection
  29. Origin and Evolution of Rickettsial Plasmids
  30. Long-term feeding a plant-based diet devoid of marine ingredients strongly affects certain key metabolic enzymes in the rainbow trout liver
  31. AHigh-glucose feeding of gilthead seabream (Sparus aurata) larvae: Effects on molecular and metabolic pathw

2015

  1. A Point Mutation in Suppressor of Cytokine Signalling 2 (Socs2) Increases the Susceptibility to Inflammation of the Mammary Gland while Associated with Higher Body Weight and Size and Higher Milk Production in a Sheep Model.
  2. Exploring transcriptomic diversity in muscle revealed that cellular signaling pathways mainly differentiate five Western porcine breeds
  3. A Point Mutation in Suppressor of Cytokine Signalling 2 (Socs2) Increases the Susceptibility to Inflammation of the Mammary Gland while Associated with Higher Body Weight and Size and Higher Milk Production in a Sheep Model
  4. The Extent of mRNA Editing Is Limited in Chicken Liver and Adipose, but Impacted by Tissular Context, Genotype, Age and Feeding as Exemplified with a Conserved Edited Site in COG3
  5. GigaTON: an extensive publicly searchable database providing a new reference transcriptome in the pacific oyster Crassostrea gigas
  6. Jflow: a workflow management system for web applications
  7. Daily rhythms in activity and mRNA abundance of enzymes involved in glucose and lipid metabolism in liver of rainbow trout, Oncorhynchus mykiss. Influence of light and food availability
  8. WIDDE: a Web-Interfaced next generation database for genetic diversity exploration, with a first application in cattle
  9. Ghrelin modulates hypothalamic fatty acid sensing and control of food intake in rainbow trout
  10. Identifying specific proteins involved in eggshell membrane formation using gene expression analysis and bioinformatics
  11. Evaluation of the impact of polyethylene microbeads ingestion in European sea bass (Dicentrarchus labrax) larvae
  12. Assessment of a 16S rRNA amplicon Illumina sequencing procedure for studying the microbiome of a symbiont-rich aphid genus
  13. Glucosensing in liver and Brockmann bodies of rainbow trout through glucokinase-independent mechanisms
  14. Transcriptomic Analysis of Trout Gill Ionocytes in Fresh Water and Sea Water Using Laser Capture Microdissection Combined with Microarray Analysis
  15. High-glucose feeding of gilthead seabream (Sparus aurata) larvae: Effects on molecular and metabolic pathwaysHigh-glucose feeding of gilthead seabream (Sparus aurata) larvae: Effects on molecular and metabolic pathways
  16. Response of lactate metabolism in brain glucosensing areas of rainbow trout (Oncorhynchus mykiss) to changes in glucose levels
  17. Drosophila type IV collagen mutation associates with immune system activation and intestinal dysfunction
  18. Transcriptome analysis of primary bovine extra-embryonic cultured cells
  19. Genome-Wide Study of Structural Variants in Bovine Holstein, Montbéliarde and Normande Dairy Breeds
  20. Food Shortage Causes Differential Effects on Body Composition and Tissue-Specific Gene Expression in Salmon Modified for Increased Growth Hormone Production
  21. A New Local Score Based Method Applied to Behavior-divergent Quail Lines Sequenced in Pools Precisely Detects Selection Signatures on Genes Related to Autism
  22. A Comparison between Transcriptome Sequencing and 16S Metagenomics for Detection of Bacterial Pathogens in Wildlife
  23. Adaptation of a Bioinformatics Microarray Analysis Workflow for a Toxicogenomic Study in Rainbow Trout
  24. Effects of insulin treatment on the response to oleate and octanoate of food intake and fatty acid sensing systems in rainbow trout
  25. Divergent selection for residual feed intake affects the transcriptomic and proteomic profiles of pig skeletal muscle
  26. Amino Acids Attenuate Insulin Action on Gluconeogenesis and Promote Fatty Acid Biosynthesis via mTORC1 Signaling Pathway in trout Hepatocytes
  27. Roles of leptin and ghrelin in adipogenesis and lipid metabolism of rainbow trout adipocytes in vitro
  28. Feeding rainbow trout with a lipid-enriched diet: effects on fatty acid sensing, regulation of food intake, and cellular signaling pathways
  29. Alteration of cellular lipids and lipid metabolism markers in rtl-w1cells exposed to model endocrine disrupters
  30. Primary Bovine Extra-Embryonic Cultured Cells: A New Resource for the Study of In Vivo Peri-Implanting Phenotypes and Mesoderm Formation
  31. Genome-wide immunity studies in the rabbit: transcriptome variations in peripheral blood mononuclear cells after in vitro stimulation by LPS or PMA-Ionomycin
  32. The development and characterization of a 57K single nucleotide polymorphism array for rainbow trout
  33. Estudio del perfil transcripcional de genes implica dos en el metabolismo de los Ácidos grasos de la leche en dos razas ovinas.
  34. Genome-Wide Characterization of RNA Editing in Chicken Embryos Reveals Common Features among Vertebrates
  35. Divergent selection for residual feed intake affects the transcriptomic and proteomic profiles of pig skeletal muscle
  36. Safety and Efficacy Compared between Irinotecan-Loaded Microspheres HepaSphere and DC Bead in a Model of VX2 Liver Metastases in the Rabbit
  37. The BioMart community portal: an innovative alternative to large, centralized data repositories
  38. Defining mononuclear phagocyte subset homology across several distant warm-blooded vertebrates through comparative transcriptomics
  39. C-Nap1 mutation affects centriole cohesion and is associated with a Seckel-like syndrome in cattle
  40. Molecular Signatures Discriminating the Male and the Female Sexual Pathways in the Pearl Oyster Pinctada margaritifera
  41. Detection of Orientia sp. DNA in rodents from Asia, WestAfrica and Europe
  42. An integrated approach to bovine oocyte quality: from phenotype to genes
  43. Metabolic response in liver and Brockmann bodies of rainbow trout to inhibition of lipolysis; possible involvement of the hypothalamus–pituitary–interrenal (HPI) axis
  44. Combined QTL and Selective Sweep Mappings with Coding SNP Annotation and cis-eQTL Analysis Revealed PARK2 and JAG2 as New Candidate Genes for Adiposity Regulation
  45. Genome-wide immunity studies in the rabbit: transcriptome variations in peripheral blood mononuclear cells after in vitro stimulation by LPS or PMA-Ionomycin
  46. A medium density genetic map and QTL for behavioral and production traits in Japanese quail
  47. Integrated production of polyhydroxyalkanoates (PHAs) with municipal wastewater and sludge treatment at pilot scale
  48. Regulation of lipid metabolism and peroxisome proliferator-activated receptors in rainbow trout adipose tissue by lipolytic and antilipolytic endocrine factors
  49. 118 comparison of transcriptome profiles from endometrial caruncles and peripheral blood mononuclear cells reveal common and tissue-specific biological processes regulated at implantation in sheep
2014
  1. Pig Skin Includes Dendritic Cell Subsets Transcriptomically Related to Human CD1a and CD14 Dendritic Cells Presenting Different Migrating Behaviors and T Cell Activation Capacities
  2. Hypoxic episode during the larval period has long-term effects on European sea bass juveniles (Dicentrarchus labrax)
  3. Comparison of whole‐genome (13X) and capture (87X) resequencing methods for SNP and genotype callings
  4. Evolutionary history and epigenetic regulation of the three paralogous pax7 genes in rainbow trout
  5. 118 comparison of transcriptome profiles from endometrial caruncles and peripheral blood mononuclear cells reveal common and tissue-specific biological processes regulated at implantation in sheep
  6. Impact of the Genetic Background on the Composition of the Chicken Plasma MiRNome in Response to a Stress
  7. Regulation of lipid metabolism and PPARs in rainbow trout adipose tissue by lipolytic and antilipolytic endocrine factors
  8. Epigenomic and transcriptomic regulation of environmental responses in the Pacific oyster, Crassostrea gigas
  9. The development and characterization of a 57K single nucleotide polymorphism array for rainbow trout
  10. High-Throughput Sequencing Analyses of XX Genital Ridges Lacking FOXL2 Reveal DMRT1 Up-Regulation Before SOX9 Expression During the Sex-Reversal Process in Goats
  11. Pig Skin Includes Dendritic Cell Subsets Transcriptomically Related to Human CD1a and CD14 Dendritic Cells Presenting Different Migrating Behaviors and T Cell Activation Capacities
  12. Transcriptomic Profiling of Gametogenesis in Triploid Pacific Oysters Crassostrea gigas: Towards an Understanding of Partial Sterility Associated with Triploidy
  13. DNA Methylation and Transcription in a Distal Region Upstream from the Bovine AlphaS1 Casein Gene after Once or Twice Daily Milking
  14. Effects of fish oil replacement by a vegetable oil blend on digestibility, postprandial serum metabolite profile, lipid and glucose metabolism of European sea bass (Dicentrarchus labrax) juveniles
  15. Re-Sequencing Data for Refining Candidate Genes and Polymorphisms in QTL Regions Affecting Adiposity in Chicken
  16. Neuropeptides encoded by the genomes of the Akoya pearl oyster Pinctata fucata and Pacific oyster Crassostrea gigas : A bioinformatic and peptidomic survey
  17. Genome-wide characterization of RNA editing in chicken: lack of evidence for non-A-to-I events
  18. jvenn: an interactive Venn diagram viewer
  19. Gdnf-Gfra1 Pathway Is Expressed in a Spermatogenetic Dependent Manner and Is Regulated by Fsh in a Fish Testis
  20. Early bovine embryos regulate oviduct epithelial cell gene expression during in vitro co-culture
  21. Genetic Bases of Resistance versus Susceptibility to Flavobacterium psychrophilum in Rainbow Trout
  22. RAD-Seq Mapping of Spontaneous Masculinization in XX Doubled Haploid Rainbow Trout Lines
  23. Local Score Based Method Applied On Pool-Sequenced Behavior-Divergent Lines Precisely Detected Selection Signatures Related To Autism In Quail.
  24. RNA-seq Analysis of Transcriptome Response to VHS-V Infection in Two Target Tissues of Resistant vs Susceptible Trout Clonal Lines.
  25. Energy and lipid metabolism gene expression of D18 embryos in dairy cows is related to dam physiological status
  26. Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle
  27. The Loss of Adipokine Genes in the Chicken Genome and Implications for Insulin Metabolism
  28. An integrative method to normalize RNA-Seq data
  29. Identification of large intergenic non-coding RNAs in bovine muscle using next-generation transcriptomic sequencing
  30. Gonad transcriptome analysis of pearl oyster Pinctada margaritifera: identification of potential sex differentiation and sex determining genes
  31. Attenuated sensing of SHH by Ptch1 underlies evolution of bovine limbs
  32. Concordance analysis for QTL detection in dairy cattle: a case study of leg morphology
  33. RNAbrowse: RNA-Seq De Novo Assembly Results Browser
  34. Susceptibility to Salmonella carrier-state: A possible Th2 response in susceptible chicks
  35. Dietary methionine availability affects the main factors involved in muscle protein turnover in rainbow trout (Oncorhynchus mykiss)
  36. Effects of intracerebroventricular treatment with oleate or octanoate on fatty acid metabolism in Brockmann bodies and liver of rainbow trout
  37. Existence of Conventional Dendritic Cells in Gallus gallus Revealed by Comparative Gene Expression Profiling
  38. Is plasma cortisol response to stress in rainbow trout regulated by catecholamine-induced hyperglycemia?
  39. Zoonotic bacterial survey assessed by next-generation sequencing
  40. Hen uterine gene expression profiling during eggshell formation reveals putative proteins involved in the supply of minerals or in the shell mineralization process
  41. Central administration of oleate or octanoate activates hypothalamic fatty acid sensing and inhibits food intake in rainbow trout
  42. Spermatogonial Stem Cell Quest: nanos2, Marker of a Subpopulation of Undifferentiated A Spermatogonia in Trout Testis
  43. Contribution of mammary epithelial cells to the immune response during early stages of a bacterial infection to Staphylococcus aureus
  44. Connectivity of vertebrate genomes: Paired-related homeobox (Prrx) genes in spotted gar, basal teleosts, and tetrapods
  45. Metabolic consequences of microRNA-122 inhibition in rainbow trout, Oncorhynchus mykiss
  46. Antioxidant defense system is altered by dietary oxidized lipid in first-feeding rainbow trout (Oncorhynchus mykiss)
  47. Quantitative trait loci for magnitude of the plasma cortisol response to confinement in rainbow trout
  48. Design and Characterization of a 52K SNP Chip for Goats
  49. Transcriptome-wide investigation of genomic imprinting in chicken
  50. Development of SNP genotyping arrays in two shellfish species
  51. The Jumonji gene family in Crassostrea gigas suggests evolutionary conservation of Jmj-C histone demethylases orthologues in the oyster gametogenesis and development
2013
  1. Once daily milking induces the methylation of a distal regulatory region located upstream from the s1 casein gene
  2. Identification of QTL associated with prenatal mortality in dairy cattle
  3. Microbioreactor Array Screening of Wnt Modulators and Microenvironmental Factors in Osteogenic Differentiation of Mesenchymal Progenitor Cells
  4. An overview of gene expression dynamics during early ovarian folliculogenesis: specificity of follicular compartments and bi-directional dialog
  5. Assessment of accuracy of genomic prediction for French Lacaune dairy sheep
  6. A resource of single-nucleotide polymorphisms for rainbow trout generated by RAD sequencing of doubled haploids
  7. Short-term time course of liver metabolic response to acute handling stress in rainbow trout, Oncorhynchus mykiss
  8. Bivalve Omics: State of the Art and Potential Applications for the Biomonitoring of Harmful Marine Compounds
  9. Fsh Controls Gene Expression in Fish both Independently of and through Steroid Mediation
  10. Classification non supervisée d’un graphe de co-expression avec des méta-données pour la détection de micro-ARNs
  11. Transcriptome analyses of duck livers by high throughput RNA sequencing.
  12. The Highly Prolific Phenotype of Lacaune Sheep Is Associated with an Ectopic Expression of the B4GALNT2 Gene within the Ovary
  13. Postprandial regulation of hepatic glucokinase and lipogenesis requires the activation of TORC1 signaling in rainbow trout (Oncorhynchus mykiss)
  14. Sex-Specific Regulation of AMP-Activated Protein Kinase (AMPK) in the Pacific Oyster Crassostrea gigas
  15. Population genomics shed light on the demographic and adaptive histories of European invasion in the Pacific oyster, Crassostrea gigas
  16. Gene expression profiling of the hyperplastic growth zones of the late trout embryo myotome using laser capture microdissection and microarray analysis
  17. Evidence of sugar sensitive genes in the gut of a carnivorous fish species
  18. Apparent low ability of liver and muscle to adapt to variation of dietary carbohydrate:protein ratio in rainbow trout (Oncorhynchus mykiss)
  19. Induction of DREB2A pathway with repression of E2F, jasmonic acid biosynthetic and photosynthesis pathways in cold acclimation-specific freeze-resistant wheat crown
  20. Dendritic cell subtypes from lymph nodes and blood show contrasted gene expression programs upon Bluetongue Virus infection
  21. Differential response of bovine mammary epithelial cells to Staphylococcus aureus or Escherichia coli agonists of the innate immune system
  22. Novel Insights into the Bovine Polled Phenotype and Horn Ontogenesis in Bovidae
  23. Detection of Haplotypes Associated with Prenatal Death in Dairy Cattle and Identification of Deleterious Mutations in GART, SHBG and SLC37A2
  24. Induced pluripotent stem cells derived from rabbits exhibit some characteristics of naïve pluripotency
  25. Gene-based single nucleotide polymorphism discovery in bovine muscle using next-generation transcriptomic sequencing
  26. Caractérisation du phénotype associé à la mutation masculinisante mal chez la truite arc-en-ciel,Oncorhynchus mykiss
  27. High-density linkage mapping in a pine tree reveals a genomic region associated with inbreeding depression and provides clues to the extent and distribution of meiotic recombination
  28. Gene Expression Changes Associated with the Airway Wall Response to Injury
  29. V-erbA generates ribosomes devoid of RPL11 and regulates translational activity in avian erythroid progenitors
  30. Toxicity of Doxorubicin on Pig Liver After Chemoembolization with Doxorubicin-loaded Microspheres: A Pilot DNA-microarrays and Histology Study
  31. In vitro response of putative fatty acid-sensing systems in rainbow trout liver to increased levels of oleate or octanoate
  32. Deep sequencing for de novo construction of a marine fish (Sparus aurata) transcriptome database with a large coverage of protein-coding transcript
  33. Proteomic identification of protein associated to mature spermatozoa in the Pacific oyster Crassostrea gigas
  34. Myostatin induces atrophy of trout myotubes through inhibiting the TORC1 signaling and promoting Ubiquitin–Proteasome and Autophagy-Lysosome degradative pathways
  35. Absence of cumulus cells during in vitro maturation affects lipid metabolism in bovine oocytes.
  36. In vitro maturation of oocytes alters gene expression and signaling pathways in bovine cumulus cells
  37. Rapid evolution of pearl oyster shell matrix proteins with repetitive, low-complexity domains
  38. La génétique des caprins laitiers
  39. Profiling of Androgen Response in Rainbow Trout Pubertal Testis: Relevance to Male Gonad Development and Spermatogenesis
  40. Deep RNA Sequencing of the Skeletal Muscle Transcriptome in Swimming Fish
2012
  1. Microbioreactor Arrays for Full Factorial Screening of Exogenous and Paracrine Factors in Human Embryonic Stem Cell Differentiation
  2. Canine Recombinant Adenovirus Vector Induces an Immunogenicity-Related Gene Expression Profile in Skin-Migrated CD11b+-Type DCs
  3. Selection for high muscle fat in rainbow trout induces potentially higher chylomicron synthesis and PUFA biosynthesis in the intestine
  4. Genetic diversity and investigation of polledness in divergent goat populations using 52 088 SNPs
  5. Analyses of pig genomes provide insight into porcine demography and evolution
  6. Mitochondrial function, fatty acid metabolism, and immune system are relevant features of pig adipose tissue development
  7. Pre- and Post-Partum Mild Underfeeding Influences Gene Expression in the Reproductive Tract of Cyclic Dairy Cows
  8. A 3.7 Mb Deletion Encompassing ZEB2 Causes a Novel Polled and Multisystemic Syndrome in the Progeny of a Somatic Mosaic Bull
  9. ACTH-stimulated cortisol release from head kidney of rainbow trout is modulated by glucose concentration
  10. Fine mapping of complex traits in non-model species: using next generation sequencing and advanced intercross lines in Japanese quail
  11. Fsh and Lh have common and distinct effects on gene expression in rainbow trout testisFsh and Lh have common and distinct effects on gene expression in rainbow trout testis
  12. A duck RH panel and its potential for assisting NGS genome assembly
  13. RESPONSE of hepatic lipid and glucose metabolism to a mixture or single fatty acids: Possible presence of fatty acid-sensing mechanisms
  14. Mitochondrial function, fatty acid metabolism and immune system are relevant features of pig adipose tissue development
  15. Dietary vegetable oils do not alter the intestine transcriptome of gilthead sea bream (Sparus aurata), but modulate the transcriptomicresponse to infection with Enteromyxum leei
  16. Transcriptomic profiling of proteases and antiproteases in the liver of sexually mature hens in relation to vitellogenesis
  17. Transcriptomic and Proteomic Response of Skeletal Muscle to Swimming-Induced Exercise in Fish
  18. Effect of ration size on fillet fatty acid composition, phospholipid allostasis and mRNA expression patterns of lipid regulatory genes in gilthead sea bream (Sparus aurata)
  19. Proteomic identification of quality factors for oocytes in the Pacific oyster Crassostrea gigas
  20. Regulation of metabolism by dietary carbohydrates in two lines of rainbow trout divergently selected for muscle fat content
  21. A hemocyte gene expression signature correlated with predictive capacity of oysters to survive Vibrio infections
  22. The antimicrobial defense of the Pacific oyster, Crassostrea gigas. How diversity may compensate for scarcity in the regulation of resident/pathogenic microflora
  23. An Immune-Related Gene Evolved into the Master Sex-Determining Gene in Rainbow Trout, Oncorhynchus mykiss
  24. Transcriptional Responses of Resistant and Susceptible Fish Clones to the Bacterial Pathogen Flavobacterium psychrophilum
  25. Development and characterisation of an expressed sequence tags (EST)-derived single nucleotide polymorphisms (SNPs) resource in rainbow trout
  26. Modulation of the IgM gene expression and IgM immunoreactive cell distribution by the nutritional background in gilthead sea bream (Sparus aurata) challenged with Enteromyxum leei (Myxozoa)
  27. Uncoupled Embryonic and Extra-Embryonic Tissues Compromise Blastocyst Development after Somatic Cell Nuclear Transfer
  28. Applications of Functional Genomics in Molluscs Aquaculture
  29. Genomic Resources for Functional Genomics in Aquaculture Species
  30. Role of LXR in trout adipocytes: Target genes, hormonal regulation, adipocyte differentiation and relation to lipolysis
  31. Gametogenesis in the Pacific Oyster Crassostrea gigas: A Microarrays-Based Analysis Identifies Sex and Stage Specific Genes
  32. Amino acids downregulate the expression of several autophagy-related genes in rainbow trout myoblasts
  33. Genomic selection in the French Lacaune dairy sheep breed
  34. MARCADORES MITOCONDRIALES DE ESTRÉS OXIDATIVO Y LIPOTOXICIDAD EN DORADA (Sparus aurata)
  35. Evidence of a metabolic fatty acid sensing system in the hypothalamus and Brockmann bodies of rainbow trout: implications in food intake regulation
  36. Genetic variability and French breeding programs of three goat breeds under selection
  37. Genetic variability of transcript abundance in pig skeletal muscle at slaughter: Relationships with meat quality traits1
  38. Characterization of rainbow trout gonad, brain and gill deep cDNA repertoires using a Roche 454-Titanium sequencing approach
  39. Macronutrient-induced differences in food intake relate with hepatic oxidative metabolism and hypothalamic regulatory neuropeptides in rainbow trout (Oncorhynchus mykiss)
  40. Toxicity of Doxorubicin on Pig Liver After Chemoembolization with Doxorubicin-loaded Microspheres: A Pilot DNA-microarrays and Histology Study
  41. A synthetic rainbow trout linkage map provides new insights into the salmonid whole genome duplication and the conservation of synteny among teleosts
  42. Amino acids downregulate the expression of several autophagy-related genes in rainbow trout myoblasts
  43. Genetic susceptibility to S. aureus mastitis in sheep: differential expression of mammary epithelial cells in response to live bacteria or supernatant
  44. Characterization of GnRH-related peptides from the Pacific oyster Crassostrea gigas
  45. Athena: Text Mining Based Discovery of Scientific Workflows in Disperse Repositories
2011
  1. Glucose and lipid metabolism in the pancreas of rainbow trout is regulated at the molecular level by nutritional status and carbohydrate intake
  2. Characterizing short read sequencing for gene discovery and RNA-Seq analysis in Crassostrea gigas
  3. Expression Profiling of Wnt Signaling Genes during Gonadal Differentiation and Gametogenesis in Rainbow Trout
  4. OBIWEE : an open source bioinformatics cloud environment
  5. SLICEE: A Service oriented middleware for intensive scientific computation
  6. Regulation of LXR by fatty acids, insulin, growth hormone and tumor necrosis factor-α in rainbow trout myocytes
  7. Genetic variability of transcript abundance in pig peri-mortem skeletal muscle: eQTL localized genes involved in stress response, cell death, muscle disorders and metabolism
  8. Epilepsy Caused by an Abnormal Alternative Splicing with Dosage Effect of the SV2A Gene in a Chicken Model
  9. RNA-Seq Reveals an Integrated Immune Response in Nucleated Erythrocytes
  10. Genetic variability of transcript abundance in pig skeletal muscle at slaughtering: relationships with meat quality traits
  11. Temporal Transcriptome Changes Induced by MDV in Marek's Disease-Resistant and -Susceptible Inbred Chickens
  12. Analysis of stress-induced hepatic gene expression in rainbow trout (Oncorhynchus mykiss) selected for high- and low-responsiveness to stress
  13. Big Defensins, a Diverse Family of Antimicrobial Peptides That Follows Different Patterns of Expression in Hemocytes of the Oyster Crassostrea gigas
  14. Development of a Pacific oyster (Crassostrea gigas) 31,918-feature microarray:Identification of reference genes and tissue-enriched expression patterns.
  15. RNAspace.org: An integrated environment for the prediction, annotation, and analysis of ncRNA
  16. SigReannot-mart: a query environment for expression microarray probe re-annotations
  17. BioMart Central Portal: an open database network for the biological community
  18. A functional genomic approach to the study of the milking ability in dairy sheep
  19. Cholecystokinin impact on rainbow trout glucose homeostasis: Possible involvement of central glucosensors
  20. Transcriptome profiling of sheep granulosa cells and oocytes during earlyfollicular development obtained by Laser Capture Microdissection
  21. Gene Expression Profiling of Dendritic Cells Reveals Important Mechanisms Associated with Predisposition to Staphylococcus Infections
  22. Infection of non-host species dendritic cells in vitro with an attenuated myxoma virus induces gene expression predicting efficacy as a vaccine vector
  23. Whole Transcriptome Profiling of Successful Immune Response to Vibrio Infections in the Oyster Crassostrea gigas by Digital Gene Expression Analysis
  24. Molecular profiling of the gilthead sea bream (Sparus aurata L.) response to chronic exposure to the myxosporean parasite Enteromyxum leei
  25. Ghrelin effects on central glucosensing and energy homeostasis-related peptides in rainbow trout
  26. Analysis of BAC-end sequences in rainbow trout: content characterization and assessment of synteny between trout and other fish genomes
  27. Molecular characterization and expression analysis of six peroxiredoxin paralogous genes in gilthead sea bream (Sparus aurata): Insights from fish exposed to dietary, pathogen and confinement stressors.
  28. The Metabolic Consequences of Hepatic AMP-Kinase Phosphorylation in Rainbow Trout
  29. Transcriptome sequencing and microarray development for the Manila clam, Ruditapes philippinarum: genomic tools for environmental monitoring
  30. Regulation of de novo hepatic lipogenesis by insulin infusion in rainbow trout fed a high-carbohydrate diet
  31. Strengthening insights into host responses to mastitis infection in ruminants by combining heterogeneous microarray data sources
  32. Transcriptomic analysis of milk somatic cells in mastitis resistant and susceptible sheep upon challenge with Staphylococcus epidermidis and Staphylococcus aureus
  33. Effect of acute and chronic insulin administrations on major factors involved in the control of muscle protein turnover in rainbow trout (Oncorhynchus mykiss)
  34. PhyleasProg: a user-oriented web server for wide evolutionary analyses
  35. Functional genomics of the muscle response to restraint and transport in chickens
  36. Evidence for a gut‐brain axis used by glucagon‐like peptide‐1 to elicit hyperglycemia in fish
  37. FoxO1 Is Not a Key Transcription Factor in the Regulation of myostatin (mstn-1a and mstn-1b) Gene Expression in Trout Myotubes.
  38. Genome wide SNP discovery, analysis and evaluation in mallard (Anas platyrhynchos).
  39. Role des acides amines dans la regulation de expression des genes hepatiques du metabolisme intermediaire chez la truite arc-en-ciel
  40. Purification and Identification of Sperm Surface Proteins and Changes during Epididymal Maturation
  41. Zebrafish as a model organism for nutrition and growth: towards comparative studies of nutritional genomics applied to aquacultured fishes
  42. Characterization of a pig skeletal muscle microarray to study pork quality:the GenmascqChip 15K
  43. Identification of differentially expressed genes in chickens differing in muscle glycogen content and meat quality
  44. Use of OmpU porins for attachment and invasion of Crassostrea gigas immune cells by the oyster pathogen Vibrio splendidus
  45. Insulin Stimulates Lipogenesis and Attenuates Beta-Oxidation in White Adipose Tissue of Fed Rainbow Trout
  46. Dietary carbohydrate 1 to protein ratio affects TOR signaling and metabolism-related gene expression in the liver and muscle of rainbow trout after a single meal.
  47. The duplicated rainbow trout (Oncorhynchus mykiss) T-box transcription factors 1, tbx1a and tbx1b, are up-regulated during testicular development
  48. l-Leucine, l-Methionine, and l-Lysine Are Involved in the Regulation of Intermediary Metabolism-Related Gene Expression in Rainbow Trout Hepatocytes
  49. A small set of extra-embryonic genes defines a new landmark for bovine embryo staging
2010
  1. Bioinformatic analysis of ESTs collected by Sanger and pyrosequencing methods for a keystone forest tree species: oak
  2. Glucose homeostasis in rainbow trout fed a high carbohydrate diet: metformin and insulin interact in a tissue-dependent manner
  3. Bio-informatique : Principes d'utilisation des outils
  4. A small set of extra-embryonic genes defines a new landmark for bovine embryo staging
  5. Influence of degradation on inflammatory profile of polyphosphazene coated PMMA and trisacryl gelatin microspheres in a sheep uterine artery embolization model
  6. Regulation of LPCAT3 by LXR
  7. Kinetics of gene expression and signaling in bovine cumulus cells throughout IVM in different mediums in relation to oocyte developmental competence, cumulus apoptosis and progesterone secretion
  8. DNA methylation patterns provide insight into epigenetic regulation in the Pacific oyster (Crassostrea gigas)
  9. Non PCR-amplified Transcripts and AFLP fragments as reduced representations of the quail genome for 454 Titanium sequencing
  10. An in vivo and in vitro assessment of autophagy-related gene expression in muscle of rainbow trout (Oncorhynchus mykiss)
  11. Transcriptome analysis of porcine PBMCs after in vitro stimulation by LPS or PMA/ionomycin using an expression array targeting the pig immune response
  12. Regional regulation of transcription in the chicken genome
  13. A factor model to analyze heterogeneity in gene expression
  14. Development of an oligo DNA microarray for the European sea bass and its application to expression profiling of jaw deformity
  15. Effects of dietary vitamin A on broodstock performance, egg quality, early growth and retinoid nuclear receptor expression in rainbow trout (Oncorhynchus mykiss)
  16. Genetic diversity in farm animals – a review
  17. Gut glucose metabolism in rainbow trout: implications in glucose homeostasis and glucosensing capacity
  18. Intrauterine Growth Restriction Modifies the Developmental Pattern of Intestinal Structure, Transcriptomic Profile, and Bacterial Colonization in Neonatal Pigs
  19. Cloning, Tissue Expression Analysis, and Functional Characterization of Two Δ6-Desaturase Variants of Sea Bass (Dicentrarchus labrax L.)
  20. Use of microarray technology to assess the time course of liver stress response after confinement exposure in gilthead sea bream (Sparus aurata L.)
  21. Integration of insulin and amino acid signals that regulate hepatic metabolism-related gene expression in rainbow trout: role of TOR
  22. Molecular regulation of lipid metabolism in liver and muscle of rainbow trout subjected to acute and chronic insulin treatments
  23. Finding candidate genes under positive selection in Non-model species: examples of genes involved in host specialization in pathogens
  24. Molecular diversity of antimicrobial effectors in the oyster Crassostrea gigas
  25. Gene expression profiling to identify eggshell proteins involved in physical defense of the chicken egg
  26. Gene expression survey of mitochondrial uncoupling proteins (UCP1/UCP3) in gilthead sea bream (Sparus aurata L.)
2009
  1. Population Genetics of the Eastern Oyster Crassostrea virginica (Gmelin, 1791) in the Gulf of Mexico
  2. Expression profiling of rainbow trout testis development identifies evolutionary conserved genes involved in spermatogenesis
  3. Differentially expressed genes for aggressive pecking behaviour in laying hens
  4. Changes in white muscle transcriptome induced by dietary energy levels in two lines of rainbow trout (Oncorhynchus mykiss) selected for muscle fat content
  5. Pasture-feeding of charolais steers influences skeletal muscle metabolism and gene expression
  6. Terminal differentiation of goat mammary tissue during pregnancy requires the expression of genes involved in immune functions
  7. Microarray-Based Identification of Gonad Transcripts Differentially Expressed Between Lines of Pacific Oyster Selected to Be Resistant or Susceptible to Summer Mortality
  8. Design of a High Density SNP Genotyping Assay in the Pig Using SNPs Identified and Characterized by Next Generation Sequencing Technology
  9. Differential gene expression after total replacement of dietary fish meal and fish oil by plant products in rainbow trout (Oncorhynchus mykiss) liver
  10. Benchmarking workflow discovery: a case study from bioinformatics
  11. Analysis of severe feather pecking behavior in a high feather pecking selection line
  12. Estrogen treatment up-regulates female genes but does not suppress all early testicular markers during rainbow trout male-to-female gonadal trans-differentiation
  13. The adult boar testicular and epididymal transcriptome
  14. Comprehensive EST analysis of the symbiotic sea anemone Anemonia viridis
  15. Gene expression profiles of bovine caruncular and intercaruncular endometrium at implantation
  16. Generation and analysis of a 29,745 unique Expressed Sequence Tags from the Pacific oyster (Crassostrea gigas) assembled into a publicly accessible database: the GigasDatabase.
  17. Metformin improves postprandial glucose homeostasis in rainbow trout fed dietary carbohydrates: a link with the induction of hepatic lipogenic capacities?
  18. sigReannot: an oligo-set re-annotation pipeline based on similarities with the Ensembl transcripts and Unigene clusters
  19. Comparison of three microarray probe annotation pipelines: differences in strategies and their effect on downstream analysis
  20. The EADGENE and SABRE post-analyses workshop
  21. Using microarrays to identify positional candidate genes for QTL: the case study of ACTH response in pigs
  22. BioQuali Cytoscape plugin: analysing the global consistency of regulatory networks
  23. Regulation of Bovine Oocyte-Specific Transcripts During In Vitro Oocyte Maturation and After Maternal–Embryonic Transition Analyzed Using a Transcriptomic Approach
  24. Revealing the dynamics of gene expression during Embryonic Genome Activation and first differentiation in the rabbit embryo using a dedicated array screening
2008
  1. Changes induced by dietary energy intake and divergent selection for muscle fat content in rainbow trout (Oncorhynchus mykiss), assessed by transcriptome and proteome analysis of the liver
  2. Transcriptome profiling of the feeding-to-fasting transition in chicken liver
  3. Association among growth, food consumption-related traits and amylase gene polymorphism in the Pacific oyster Crassostrea gigas
  4. A pilot study on transcriptome data analysis of folliculogenesis in pigs
  5. In vivo gene expression in granulosa cells during pig terminal follicular development
  6. Altered dietary carbohydrates significantly affect gene expression of the major glucosensing components in Brockmann bodies and hypothalamus of rainbow trout
  7. Identification of transcripts involved in meiosis and follicle formation during ovine ovary developmentInsulin regulates the expression of several metabolism-related genes in the liver and primary hepatocytes of rainbow trout (Oncorhynchus mykiss)
  8. Identification and characterization of 18 novel polymorphic microsatellite makers derived from expressed sequence tags in the Pacific oyster Crassostrea gigas
  9. Transcription analysis in the MeLiM swine model identifies RACK1 as a potential marker of malignancy for human melanocytic proliferation
  10. MarkerSet: a marker selection tool based on markers location and informativity in experimental designs
  11. An in vivo and in vitro assessment of TOR signalling cascade 1 in rainbow trout (Oncorhynchus mykiss)
  12. Hepatic gene expression profiles in juvenile rainbow trout (Oncorhynchus mykiss) fed fishmeal or fish oil-free diets.
  13. Transcriptomic analysis of the dialogue between Pseudorabies virus and porcine epithelial cells during infection
  14. A muscle transcriptome analysis identifies positional candidate genes for a complex trait in pig.
  15. Addition of the microchromosome GGA25 to the chicken genome sequence assembly through radiation hybrid and genetic mapping
  16. Amplification biases: possible differences among deviating gene expressions
  17. Liver and muscle metabolic changes induced by dietary energy content and genetic selection in rainbow trout (Oncorhynchus mykiss)
  18. Identification of differentially expressed genes in spontaneously regressing melanoma using the MeLiM Swine Model
  19. Gene array and real time PCR analysis of the adrenal sensitivity to adrenocorticotropic hormone in pig
  20. Feeding Status Regulates the Polyubiquitination Step of the Ubiquitin-Proteasome-Dependent Proteolysis in Rainbow Trout (Oncorhynchus mykiss) Muscle1
  21. Rainbow Trout Gonadal Masculinization Induced by Inhibition of Estrogen Synthesis Is More Physiological Than Masculinization Induced by Androgen Supplementation
    Link to Supplementary data
  22. A pig multi-tissue normalised cDNA library: large-scale sequencing, cluster analysis and 9K micro-array resource generation
2007
  1. A cDNA microarray assessment of gene expression in the liver of rainbow trout (Oncorhynchus mykiss) in response to a handling and confinement stressor
  2. Dietary fat level modifies the expression of hepatic genes in juvenile rainbow trout (Oncorhynchus mykiss) as revealed by microarray analysis
  3. Construction of a female microsatellite linkage map in rainbow trout (Oncorhynchus mykiss), a tetraploid species
  4. Salmonid DNA Microarrays and Other Tools for Functional Genomics Research
  5. Effect of photoperiod manipulation on rainbow trout (Oncorhynchus mykiss) egg quality: a genomic study
  6. Gene Expression Patterns During the Larval Development of European Sea Bass (Dicentrarchus Labrax) by Microarray Analysis
  7. Dynamic gene expression in fish muscle during recovery growth induced by a fasting-refeeding schedule
  8. Differential regulation of abundance and deadenylation of maternal transcripts during bovine oocyte maturation in vitro and in vivo
  9. Large-scale analysis by SAGE reveals new mechanisms of v-erbA oncogene action
  10. Cinétique d'infection des cellules épithéliales porcines PK15 par le virus de la maladie d'Aujeszky : étude conjointe de l'expression des gènes viraux et cellulaires
  11. Androgen-induced masculinization in rainbow trout results in a marked dysregulation of early gonadal gene expression profiles
  12. Reduced lipid intake leads to changes in digestive enzymes in the intestine but has minor effects on key enzymes of hepatic intermediary metabolism in rainbow trout (Oncorhynchus mykiss)
  13. The chicken RH map: current state of progress and microchromosome mapping
  14. Longitudinal Analysis of Gene Expression in Porcine Skeletal Muscle After Post-Injection Local Injury
  15. Early feeding of carnivorous rainbow trout (Oncorhynchus mykiss) with a hyperglucidic diet during a short period: effect on dietary glucose utilisation in juveniles
  16. Microarray-based analysis of fish egg quality after natural or controlled ovulation
  17. Recent advances in cattle functional genomics and their application to beef quality
  18. AGScan: a pluggable microarray image quantification software based on the ImageJ library.
2006
2005
2004
2003