This tool based on a non filtered blast tries to find redundant DNA sequences between the two sets pasted hereunder in multi FASTA format.
Two sequences are said redundant if they share at least a segment (called window) which fulfills the following constraints:
- length of the window is at least X bases length, or Y% of the total length of the query sequence
- the window defined like this must be conserved between the two sequences with at least Z% of identity.
Parameters are thus X or Y, and Z.
NB. Sequences with same names are skipped from output.