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Trout Agilent OligoSet Annotation using 25 of May 2010

By: FM

The rainbow trout 37 K Agilent OligoSet has been annotated using the trout contig assembly (05-2010).

the process includes :


oligo vs contig ( :


36943 probes with contig hits

24294 probes with unchanged contig hits ( vs



contig hits vs banks :


- danio,gasterosteus,medaka,takifugu,tetraodon,salmonids fish protein banks

- uniref50, swissprot, refseq_protein : protein banks

- unigene_trout,salmonids_nucleic : nucleic banks


see readme

for file content details.


see below for annotation archives.



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