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Trout Agilent OligoSet Annotation using s.om.10 25 of May 2010

By: FM


The rainbow trout 37 K Agilent OligoSet has been annotated using the trout contig assembly s.om.10 (05-2010).

the process includes :

 

oligo vs contig (s.om.10) :

 

36943 probes with contig hits

24294 probes with unchanged contig hits (s.om.9 vs s.om.10)

 

 

contig hits vs banks :

 

- danio,gasterosteus,medaka,takifugu,tetraodon,salmonids fish protein banks

- uniref50, swissprot, refseq_protein : protein banks

- unigene_trout,salmonids_nucleic : nucleic banks

 

see readme

for file content details.

 

see below for annotation archives.

 

 


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