Version 1.92

Released on May 2019

• External tools compatibility: TransDecoder-v5.0, Trinity-v2.8.4.
• Add option --assemblies to runMeta to perform meta-assembly directly from fasta files.
• Add SLURM scheduler compatibility.
• Provide a patch to reduce TransRate memory requirement.
• Fix various bugs.
• Update Docker image.

Version 1.91

Released on May 2017

• Some external tools new version: bwa v0.7.15, samtools 1.3, Trinity 2.4.0, busco 3.0.
• Add new normalization round after fastq merging for multi samples assemblies.
• Parallelization of contig consensus editing.
• Add busco graph to assessment report.
• Fix various bugs.
• Update Docker image.

Version 1.9

Released on December 2016: published version.

• Docker image is now available.
• Read normalization can be run using Trinity or Khmer.
• Parallelization of multi sample assemblies processing.
• Parallelization of local (non SGE) assemblies processing.
• TSA checking now includes vector/adaptor and contaminants detection.
• New embedded Trinity version is the last production version i.e. v2.3.
• New embedded BUSCO version is 2.0.

Version 1.8

Released on May 2016

• Add BUSCO in runAssessment procedure.

Version 1.7

Released on September 2015

• Add runAssessment to evaluate assemblies.
• Add runCheck to check the workflows dependencies.
• Add assembly scoring by TransRate